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University of Waikato (2010)

Fungal biodiversity in extreme environments and wood degradation potential

Jurgens, Joel Allan

Titre : Fungal biodiversity in extreme environments and wood degradation potential

Auteur : Jurgens, Joel Allan

Université de soutenance : University of Waikato

Grade : Doctor of Philosophy (PhD) 2010

Résumé
This doctoral thesis reports results from a multidisciplinary investigation of fungi from extreme locations, focusing on one of the driest and thermally broad regions of the world, the Taklimakan Desert, with comparisons to polar region deserts. Additionally, the capability of select fungal isolates to decay lignocellulosic substrates and produce degradative related enzymes at various temperatures was demonstrated.
The Taklimakan Desert is located in the western portion of the People’s Republic of China, a region of extremes dominated by both limited precipitation, less than 25 mm of rain annually and tremendous temperature variation. The organisms that inhabit this region are required to function in conditions that preclude most forms of life. Fungi are particularly interesting organisms for consideration of life in extreme environments since they absorb nutrients from their surroundings with diffusion taking place through the cell wall and plasma membrane requiring free water. The regions near the poles are another example of areas with extreme environmental conditions, with the north and south polar regions having similarities and differences to each other and to the Taklimakan Desert. All three regions experiences extreme cold but only the Taklimakan Desert has exceedingly warm temperatures. The Taklimakan Desert is diurnal and the polar regions have long periods of light and dark in summer and winter months, respectively. The annual precipitation in the specific polar sites is between 100-200 mm, 5-20 fold more than the Taklimakan Desert.
From soil, rock and wood collected in the Taklimakan Desert, 194 independent fungal isolates were generated and identified based on extracted DNA and analysis of the internal transcribed spacer (ITS) region of the rDNA. Dominant taxa were from closely related Thielavia, Embellisia and Alternaria genera. Total DNA extracted directly from environmental samples and subjected to molecular fingerprinting identified 51 consensus sequences almost entirely of taxa not represented by culturing, with the dominant taxa in the Penicillium and Colletotrichum genera.
The sequence data from the Taklimakan Desert cultured fungi were phylogenetically investigated by means of neighbor-joining analysis and compared to fungal sequences derived from various substrates collected at sites in Antarctica and the Arctic with wood as the common substrate from which isolates were obtained among all three locations. Based on comparisons of consensus sequences to the polar fungi and fungal databases, 72 isolates appear to represent novel taxa that may be endemic to the Taklimakan Desert and warrant further investigation.

Mots clés : fungi ; desert ; Taklimakan Desert ; polar regions ; lignocellulosic ; decay ; Thielavia sp.

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